treefile
select-file: Click this button to upload a tree file in plain text files, and in Newick format.
Example trees in Newick format:
- A tree with bootstraps and branch lengths:
(A:0.1,(B:0.1,C:0.1)90:0.1)98:0.3);
A, B, C : leaf names, also used as node IDs
0.1, 0.3 : branch lengths
90,98 : bootstrap values
- A tree with internal node IDs:
(A:0.1,(B:0.1,C:0.1)INT1:0.1[90])INT2:0.3[98]);
A, B, C : leaf names, also used as node IDs
INT1, INT2 : internal node IDs
0.1, 0.3 : branch lengths
90,98 : bootstrap values
view: Click this button to view the tree file, only valid after uploading a tree file.
copy-nodesID: Copy all node IDs of the tree to the system clipboard for easy inclusion in layer data files, only valid after uploading a tree file.
We strongly recommend that users use simple IDs to build phylogenetic trees.
The tree above will generate the below IDs:
MT760162
FR681897
FN393747
KT253329
MK238778
FM883672
AJ744861
FR687202
MT759893
AJ575266
HE985070
MK096443
KF309029
MH197303
AY699794
AJ575263
AJ608641
AJ717393
MW309385
AJ564643
FM991866
DQ112660
JF937440
HQ326178
MT758060
EF151805
originalJsonData
We use file in json format to save the final drawing state of svg canvas, which is described in more detail in tree export chapter.
select-file: Click this button to upload a json file, and the final drawing state of svg canvas will be restored for easy secondary modification.
Example data
view: Click this button to view the example tree file used in the page opened for the first time.