treefile

canvasSetting-1

select-file: Click this button to upload a tree file in plain text files, and in Newick format.

Example trees in Newick format:

  • A tree with bootstraps and branch lengths:
(A:0.1,(B:0.1,C:0.1)90:0.1)98:0.3);

A, B, C : leaf names, also used as node IDs

0.1, 0.3 : branch lengths

90,98 : bootstrap values

  • A tree with internal node IDs:
(A:0.1,(B:0.1,C:0.1)INT1:0.1[90])INT2:0.3[98]);

A, B, C : leaf names, also used as node IDs

INT1, INT2 : internal node IDs

0.1, 0.3 : branch lengths

90,98 : bootstrap values

view: Click this button to view the tree file, only valid after uploading a tree file.

copy-nodesID: Copy all node IDs of the tree to the system clipboard for easy inclusion in layer data files, only valid after uploading a tree file.

We strongly recommend that users use simple IDs to build phylogenetic trees.

canvasSetting-1

The tree above will generate the below IDs:

MT760162
FR681897
FN393747
KT253329
MK238778
FM883672
AJ744861
FR687202
MT759893
AJ575266
HE985070
MK096443
KF309029
MH197303
AY699794
AJ575263
AJ608641
AJ717393
MW309385
AJ564643
FM991866
DQ112660
JF937440
HQ326178
MT758060
EF151805

originalJsonData

canvasSetting-1

We use file in json format to save the final drawing state of svg canvas, which is described in more detail in tree export chapter.

select-file: Click this button to upload a json file, and the final drawing state of svg canvas will be restored for easy secondary modification.

Example data

canvasSetting-1

view: Click this button to view the example tree file used in the page opened for the first time.

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